SubtiBank SubtiBank
Version comparison:

2019-02-19 19:42:302018-10-11 18:34:34

geneLength

519

516

Gene

Coordinates

1,484,466 1,484,984

1,484,466 → 1,484,984

The protein

Structure

[PDB|2E3U] (from Pyrococcus horikoshii, 24% identity) [pubmed|17654551]

[PDB|2E3U] (from Pyrococcus horikoshii, 24% identity)

Biological materials

Mutant

MGNA-A772 (ykuK::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/772 NBRP B. subtilis, Japan]

GP214 (deletion of ''[[gene|ykuJ]]-[[gene|ykuK]]-[[gene|abbA]]-[[gene|darB]]'', replaced by ''aphA3''), available in the [SW|Stlke] lab

BKE14110 ([[gene|ykuK]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE14110 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCACGACACTCCTTTTCA, downstream forward: _UP4_TAATTTGGCTGAAAAAGCCA

BKK14110 ([[gene|ykuK]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK14110 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCACGACACTCCTTTTCA, downstream forward: _UP4_TAATTTGGCTGAAAAAGCCA

MGNA-A772 (ykuK::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/772 NBRP B. subtilis, Japan]

GP214 (deletion of ''[[gene|ykuJ]]-[[gene|ykuK]]-[[gene|abbA]]-[[gene|darB]]'', replaced by ''aphA3''), available in the [SW|Stülke] lab

BKE14110 (Δ[[gene|ykuK]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE14110 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCACGACACTCCTTTTCA, downstream forward: _UP4_TAATTTGGCTGAAAAAGCCA

BKK14110 (Δ[[gene|ykuK]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK14110 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCACGACACTCCTTTTCA, downstream forward: _UP4_TAATTTGGCTGAAAAAGCCA

Biological materials

lacZ fusion

pGP709 (in [[protein|pAC5]]), available in [SW|Stlke] lab, pGP713 (in [[protein|pAC6]]), available in [SW|Stlke] lab

pGP709 (in [[protein|pAC5]]), available in [SW|Stülke] lab, pGP713 (in [[protein|pAC6]]), available in [SW|Stülke] lab

References

16395550, 16165328, 17654551

16395550, 16165328